FACULTY OF ENGINEERING
Department of Biomedical Engineering
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BME 404 | Course Introduction and Application Information
| Course Name |
Biomedical Image Processing
|
|
Code
|
Semester
|
Theory
(hour/week) |
Application/Lab
(hour/week) |
Local Credits
|
ECTS
|
|
BME 404
|
Fall/Spring
|
2
|
2
|
3
|
5
|
| Prerequisites |
None
|
|||||
| Course Language |
English
|
|||||
| Course Type |
Elective
|
|||||
| Course Level |
First Cycle
|
|||||
| Mode of Delivery | - | |||||
| Teaching Methods and Techniques of the Course | - | |||||
| Course Coordinator | ||||||
| Course Lecturer(s) | ||||||
| Assistant(s) | - | |||||
| Course Objectives | The aim of this course is to provide students with a knowledge and understanding of fundamental principles of medical image enhancement, registration, classification, and segmentation. |
| Learning Outcomes |
The students who succeeded in this course;
|
| Course Description | Principles of acquisition, storage, visualization, and processing of medical image data. Sampling and quantization. Picture archiving and communication systems, Medical image formats. Basic and advanced image processing algorithms. |
|
|
Core Courses | |
| Major Area Courses |
X
|
|
| Supportive Courses | ||
| Media and Management Skills Courses | ||
| Transferable Skill Courses |
WEEKLY SUBJECTS AND RELATED PREPARATION STUDIES
| Week | Subjects | Related Preparation |
| 1 | Introduction and Overview | Lecture notes |
| 2 | Medical Imaging Technology | Chp 1, 6-8. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.1, SPIE Press |
| 3 | Medical Image Acquisition, Sampling, and Quantization | Lecture notes |
| 4 | Medical Image Storage, Archiving and Communication Systems and Formats | Chp 8-9. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.3, SPIE Press |
| 5 | Medical Image Processing, Enhancement, Filtering | Chp 4-5. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.2, SPIE Press |
| 6 | Medical Image Segmentation - I | Chp 2-3. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.2, SPIE Press |
| 7 | Medical Image Segmentation - II | Chp 2-3. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.2, SPIE Press |
| 8 | Review and Midterm Examination | |
| 9 | Medical Image Registration - I | Chp 8. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.2, SPIE Press |
| 10 | Medical Image Registration - II | Chp 8. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.2, SPIE Press |
| 11 | Medical Image Visualization | Chp 1. "Handbook of Medical Imaging", Sonka and Fitzpatrick, Vol.3, SPIE Press |
| 12 | Medical Image Compression | Lecture notes |
| 13 | Medical Image Search and Retrieval | Lecture notes |
| 14 | Other Applications of Medical Image Analysis | Lecture notes |
| 15 | Evaluation of Term Projects | |
| 16 | Final |
| Course Notes/Textbooks | Handbook of Medical Imaging, Medical Image Processing and Analysis (2009) by Milan Sonka and J. Michael Fitzpatrick, SPIE Press, ISBN: 0819477605. |
| Suggested Readings/Materials | Biomedical Signal and Image Processing (2005) by Kayvan Najarian and Robert Splinter, CRC Press, ISBN: 0849320992.\\nDigital Image Processing for Medical Applications (2009) by Geoff Dougherty, Cambridge Univ. Press, ISBN: 0521860857.\\nMedical Imaging Signals and Systems (2005) by Jerry L. Prince and Jonathan Links, Pearson, ISBN: 0130653535.\\nBiosignal and Medical Image Processing (2008) by John L. Semmlow, CRC Press, ISBN: 1420062301. Lecture slides will be distributed as softcopy. |
EVALUATION SYSTEM
| Semester Activities | Number | Weigthing |
| Participation | ||
| Laboratory / Application |
4
|
20
|
| Field Work | ||
| Quizzes / Studio Critiques | ||
| Portfolio | ||
| Homework / Assignments | ||
| Presentation / Jury |
1
|
5
|
| Project |
1
|
15
|
| Seminar / Workshop | ||
| Oral Exams | ||
| Midterm |
1
|
20
|
| Final Exam |
1
|
40
|
| Total |
| Weighting of Semester Activities on the Final Grade |
60
|
|
| Weighting of End-of-Semester Activities on the Final Grade |
40
|
|
| Total |
ECTS / WORKLOAD TABLE
| Semester Activities | Number | Duration (Hours) | Workload |
|---|---|---|---|
| Theoretical Course Hours (Including exam week: 16 x total hours) |
16
|
2
|
32
|
| Laboratory / Application Hours (Including exam week: '.16.' x total hours) |
16
|
2
|
32
|
| Study Hours Out of Class |
16
|
2
|
32
|
| Field Work |
0
|
||
| Quizzes / Studio Critiques |
0
|
||
| Portfolio |
0
|
||
| Homework / Assignments |
0
|
||
| Presentation / Jury |
1
|
12
|
12
|
| Project |
1
|
12
|
12
|
| Seminar / Workshop |
0
|
||
| Oral Exam |
0
|
||
| Midterms |
1
|
12
|
12
|
| Final Exam |
1
|
18
|
18
|
| Total |
150
|
COURSE LEARNING OUTCOMES AND PROGRAM QUALIFICATIONS RELATIONSHIP
|
#
|
Program Competencies/Outcomes |
* Contribution Level
|
||||
|
1
|
2
|
3
|
4
|
5
|
||
| 1 | To have adequate knowledge in Mathematics, Science and Biomedical Engineering; to be able to use theoretical and applied information in these areas on complex engineering problems. |
X | ||||
| 2 | To be able to identify, define, formulate, and solve complex Biomedical Engineering problems; to be able to select and apply proper analysis and modeling methods for this purpose. |
X | ||||
| 3 | To be able to design a complex system, process, device or product under realistic constraints and conditions, in such a way as to meet the requirements; to be able to apply modern design methods for this purpose. |
X | ||||
| 4 | To be able to devise, select, and use modern techniques and tools needed for analysis and solution of complex problems in Biomedical Engineering applications. |
|||||
| 5 | To be able to design and conduct experiments, gather data, analyze and interpret results for investigating complex engineering problems or Biomedical Engineering research topics. |
X | ||||
| 6 | To be able to work efficiently in Biomedical Engineering disciplinary and multi-disciplinary teams; to be able to work individually. |
X | ||||
| 7 | To be able to communicate effectively in Turkish, both orally and in writing; to be able to author and comprehend written reports, to be able to prepare design and implementation reports, to present effectively, to be able to give and receive clear and comprehensible instructions. |
|||||
| 8 | To have knowledge about global and social impact of Biomedical Engineering practices on health, environment, and safety; to have knowledge about contemporary issues as they pertain to engineering; to be aware of the legal ramifications of engineering solutions. |
|||||
| 9 | To be aware of ethical behavior, professional and ethical responsibility; to have knowledge about standards utilized in engineering applications. |
|||||
| 10 | To have knowledge about industrial practices such as project management, risk management, and change management; to have awareness of entrepreneurship and innovation; to have knowledge about sustainable development. |
|||||
| 11 | To be able to collect data in the area of Biomedical Engineering, and to be able to communicate with colleagues in a foreign language. |
|||||
| 12 | To be able to speak a second foreign language at a medium level of fluency efficiently. |
X | ||||
| 13 | To recognize the need for lifelong learning; to be able to access information, to be able to stay current with developments in science and technology; to be able to relate the knowledge accumulated throughout the human history to Biomedical Engineering. |
|||||
*1 Lowest, 2 Low, 3 Average, 4 High, 5 Highest
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