SCI, SSCI ve AHCI tarafından taranan dergilerde yayımlanmış veya kabul edilmiş makaleler

Uluslararası

  • Yuriy Mishchenko and Chueng-Ryong Ji.
    (2017) Dark matter phenomenology of high speed galaxy cluster collisions.
    European Physical Journal , Vol. 77,
  • Zalike Keskin and Aylin Sendemir-Urkmez.
    (2017) Novel keratin modified bacterial cellulose nanocomposite production and characterization for skin tissue engineering.
    Material Science And Engineering-C , Vol. 75, 1144-1153,
  • M.U. Ghani , F. Mesadi , S.D. Kanik , A.O. Argunsah , A.F. Hobbiss , I. Israely , D. Unay , T. Tasdizen and M. Cetin.
    (2017) Dendritic Spine Classification using Shape and Appearance Features based on Two-Photon Microscopy.
    Journal Of Neuroscience Methods , No. 279, 13-21,
  • Oktay Kaplan , Burak Berber , Nezih Hekim , Osman Doluca.
    (2016) G-quadruplex prediction in E.coli genome reveals a conserved putative G-quadruplex-Hairpin-Duplex switch.
    Nucleic Acid Research , Vol. 44,
  • Yuriy Mishchenko.
    (2016) Consistent estimation of complete neuronal connectivity in large neuronal populations using sparse “shotgun” neuronal activity sampling.
    Journal Of Computational Neuroscience , No. 41,
  • David Cash , Chris Frost , Leonardo O. Iheme , Devrim Unay , Melek Kandemir , The Others.
    (2015) Assessing atrophy measurement techniques in dementia: Results from the MIRIAD atrophy challenge.
    NeuroImage , Vol. 123, 149-164,
  • Yuriy Mishchenko.
    (2015) A function for fast computation of large discrete Euclidean distance transforms in three or more dimensions in Matlab.
    Signal, Image And Video Processing , Vol. 9,
  • Osman Doluca , Jamie Withers , Trevor Loo , Patrick Edwards , Carlos Gonzalez , Vyacheslav Filichev.
    (2015) Interdependence of pyrene interactions and tetramolecular G4-DNA assembly.
    Organic & Biomolecular Chemistry , Vol. 13, No. 12, 3742-3748,
  • Rina Rudyanto , Sjoerd Kerkstra , Eva M. Van Rikxoort , Catalin Fetita , Pierre-Yves Brillet , Christophe Lefevre , Wenzhe Xue , Xiangjun Zhu , Jianming Liang , İlkay Öksüz , Devrim Ünay and The Others.
    (2014) Comparing algorithms for automated vessel segmentation in computed tomography scans of the lung: The VESSEL12 study.
    Medical Image Analysis , Vol. 18, No. 7, 1217-1232,
  • Osman Doluca , Tracy Hale , Patrick Edwards , Carlos Gonzalez , Vyacheslav Filichev.
    (2014) Assembly Dependent Fluorescence Enhancing Nucleic Acids in Sequence‐Specific Detection of Double‐Stranded DNA.
    ChemPlusChem , Vol. 79, No. 1, 58-66,
  • Yuriy Mishchenko.
    (2014) Oscillations in rational economies.
    Plos ONE , Vol. 9,
  • J.-C. Rah , E Bas , J Colonell , Y Mishchenko , B Karsh , R Fetter , E Myers , D Chklovskii , K Svoboda , T Harris , J Isaac.
    (2013) Thalamocortical input onto layer 5 pyramidal neurons measured using quantitative large-scale array tomography.
    Frontiers In Neural Circuits, , Vol. 7,
  • Osman Doluca , Jamie Withers , Vyacheslav Filichev.
    (2013) Molecular engineering of guanine-rich sequences: Z-DNA, DNA triplexes, and G-quadruplexes.
    Chemical Reviews , Vol. 113, No. 5, 3044-3083,
  • H.A. Kirisli , M Schaap , C.T. Metz , A.S. Dharampal , W.B. Meijboom , D. Unay , The Others.
    (2013) Standardized evaluation framework for evaluating coronary artery stenosis detection, stenosis quantification and lumen segmentation algorithms in computed tomography angiography.
    Medical Image Analysis , Vol. 17, No. 8, 859-876,
  • Mert Kaya , Devrim Unay.
    (2013) DressBoard: An Embedded Virtual Try-On System for Ties and Bowties.
    Journal Of Signal Processing Systems , Vol. 73, No. 2, 143-152,
  • D Unay.
    (2012) Local and global volume changes of subcortical brain structures from longitudinally varying neuroimaging data for dementia identification.
    Computerized Medical Imaging And Graphics , Vol. 36, No. 6, 464-473,
  • Yuriy Mishchenko , Liam Paninski.
    (2012) A Bayesian compressed-sensing approach for reconstruct- ing neural connectivity from subsampled anatomical data.
    Journal Of Computational Neuroscience , Vol. 33,
  • Devrim Unay , Cengizhan Ozturk , Maureen Stone.
    (2012) Single Syllable Tongue Motion Analysis Using Tagged Cine MRI.
    Computer Methods In Biomechanics And Biomedical Engineering , Vol. 17, No. 8, 853-864,
  • Robert A. Brown , Josephine Wong , Burçak Alp.
    (2012) “ Strategies for direct engineering strong, native collagen-cell constructs: pre-polymerisation”.
    Journal Of Tissue Engineering And Regenerative Medicine , Vol. 6, No. 161,
  • M Rivera-Alba , S Vitaladevuni , Y Mishchenko , Z Lu , S Takemura , L Scheffer , I Meinertzhagen , D Chklovskii , G De Polavieja.
    (2011) Wiring economy and volume exclusion determine neuronal placement in the Drosophila brain.
    Current Biology , Vol. 21,
  • Yuriy Mishchenko , Liam Paninski.
    (2011) Efficient methods for sampling spike trains in networks of coupled neurons..
    Annals Of Applied Statistics , Vol. 5,
  • Yuriy Mishchenko , Joshua Vogelstein , Liam Paninski.
    (2011) A Bayesian approach for inferring neuronal connectivity from calcium fluorescent imaging data.
    Annals Of Applied Statistics , Vol. 5,
  • Yuriy Mishchenko.
    (2011) Reconstruction of complete connectivity matrix for connectomics by sampling neural connectivity with fluorescent synaptic markers.
    Journal Of Neuroscience Methods , Vol. 196,
  • Yuriy Mishchenko , Tao Hu , J Spacek , J Mendenhall , K Harris , D Chklovskii.
    (2010) Ultrastructural analysis of hippocampal neuropil from the connectomics perspective.
    Neuron , Vol. 67,
  • MG Uzunbas , O Soldea , D Unay , M Cetin , G Unal , A Ercil , A Ekin.
    (2010) Coupled Non-Parametric Shape and Moment-Based Inter-Shape Pose Priors for Multiple Basal Ganglia Structure Segmentation.
    IEEE Transactions On Medical Imaging , Vol. 29, No. 12, 1959-1978,
  • Yuriy Mishchenko.
    (2010) On optical detection of densely labeled synapses in neuropil and mapping connectivity with combinatorially multiplexed fluorescent synaptic markers.
    Plos ONE , Vol. 5,
  • Yuriy Mishchenko.
    (2009) Automation of 3D reconstruction of neural tissue from large volume of conventional serial section transmission electron micrographs..
    Journal Of Neuroscience Methods , Vol. 176,
  • Alexandre Boutorine , Osman Doluca , Vyacheslav Filichev.
    (2009) Optimization of the sequence of twisted intercalating nucleic acids (TINA) forming triple helix with the polypurine tract of the proviral HIV DNA.
    Nucleic Acids Symp Series , Vol. 53, No. 1, 139-140,
  • Umber Cheema , Vivek Mudera , Burcak Alp.
    (2009) Identification of key factors in deep O2 cell perfusion for vascular tissue engineering.
    Nternational Journal Of Artificial Organs , Vol. 32,
  • Osman Doluca , Emel Ordu , Halil Kısakesen , Richard Sessions , A Clarke , Candan Tamerler , Nevin Karagüler.
    (2008) Effects of cysteine/cystine engineering on thermal stability of formate dehydrogenase from Candida methylica.
    FEBS JOURNAL , Vol. 275, 398-398,
  • Zimei Rong , E Leitao , J Popplewell , Burcak Alp , Pankaj Vadagam.
    (2008) Needle enzyme electrode for lactate measurement in vivo.
    IEEE Sensors Journal , Vol. 8(1), 113-,
  • Umber Cheema , Robert Brown , Burcak Alp , AJ Mcrobert.
    (2007) Spatially defined oxygen gradients and vascular endothelial growth factor expression in an engineered 3D cell model.
    Cellular And Molecular Life Sciences , Vol. 65(1), 177,
  • Umber Cheema , NS Nazhat , Burcak Alp.
    (2007) Fabricating tissues: Analysis of farming versus engineering strategies.
    Biotechnology And Bioprocess Engineering , Vol. 12 (1), 9-,
  • C.-R. Ji , Y Mishchenko , A Radyushkin.
    (2006) Higher Fock state contributions to the gener- alized parton distribution of pion.
    Physical Review D , Vol. 73,
  • Yuriy Mishchenko.
    (2006) Remedy for the fermion sign problem in the diffusion Monte Carlo method for few fermions with antisymmetric diffusion process.
    Physical Review E , Vol. 73,
  • Umber Cheema , Burcak Alp , Robert Brown.
    (2006) Perfusion of oxygen in 3D plastic compressed collagen constructs.
    European Cells And Materials , Vol. 11,
  • B Bakker , M DeWitt , C-R Ji , Y Mishchenko.
    (2005) Restoring the equivalence between the light-front and manifestly covariant formalisms.
    Physical Review D , Vol. 72,
  • Y Mishchenko , C Ji.
    (2005) A novel variational approach for quantum field theory: example of study of the ground state and phase transition in nonlinear sigma model..
    International Journal Of Modern Physics A , Vol. 20,
  • Y Mishchenko.
    (2005) Exploring properties of dark and visible mass distribution on different scales in the Universe.
    International Journal Of Modern Physics A , Vol. 20,
  • C Ji , Y Mishchenko.
    (2005) Time to space conversion in quantum field theory of flavor mixing.
    Annals Of Physics , Vol. 315,
  • A Capolupo , C Ji , Y Mishchenko , C Vitiello.
    (2004) Phenomenology of flavor oscilla- tions with nonperturbative effects from quantum field theory.
    Physics Letters B , Vol. 594,
  • Burcak Alp , Joe Andrews , Gerard Markx.
    (2003) Building of structured biomaterials using AC electrokinetics.
    IEE Engineering In Medicine And Biology , Vol. 22 (6), 91,
  • CE Verduzco-Lique , Burcak Alp , Gill Stephens , Gerard Markx.
    (2003) Construction of biofilms with defined internal architecture using dielectrophoresis and flocculation.
    Biotechnology And Bioengineering , Vol. 83(1) 34-4,
  • Y Mishchenko , C Ji.
    (2003) Molar mass estimate of dark matter from the dark mass distribution measurements.
    Physical Review D , Vol. 68,
  • Burcak Alp , Gill Stephens , Gerard Markx.
    (2002) Formation o artificial, structured microbial consortia (ASMC) by dielectrophoresis.
    Enzyme And Microbial Technology , Vol. 31, (35-43,
  • Gerard Markx , Burcak Alp , A McGilchrist.
    (2002) Electro-orientation of Schizosaccharomyces pombe in high conductivity media.
    Journal Of Microbiological Methods , Vol. 50, (52-62,
  • C Ji , Y Mishchenko.
    (2002) The general theory of quantum field mixing.
    Physical Review D , Vol. 65,
  • C Ji , Y Mishchenko.
    (2001) Nonperturbative vacuum effect in the quantum field theory of meson mixing.
    Physical Review D , Vol. 64,
  • Burcak Alp , Selma Mutlu , Mehmet Mutlu.
    (2000) Glow-discharge-treated Cellulose Acetate (CA) membrane for a high linearity single-layer glucose electrode in food industry.
    Food Research International , Vol. 33(2), 107,
  • Selma Mutlu , Burcak Alp , Serpil Ozmelles , Mehmet Mutlu.
    (1997) Amperometric determination of enzymatic activity by multienzyme biosensors.
    Journal Of Food Engineering , Vol. 33(1-2), 8,

Diğer indexler tarafından taranan dergilerde yayımlanmış veya kabul edilmiş makaleler

Ulusal

  • Yurıy Mishchenko , Murat Kaya , Mustafa Cömert.
    (2017) Beyin bilgisayar arayüzü için DVM makine öğrenme yöntemi kullanılarak EEG verilerinden sağ ve sol el hareket düşüncelerinin tespiti.
    TÜBAV Bilim Dergisi , Vol. 10, No. 3, 1-20,

Uluslararası

  • Osman Akirmak , Cagdas Tatar , Ziya Gokalp , Yuriy Mishchenko.
    (2017) Design of an Accessible, Powered Myoelectrically Controlled Hand Prosthesis.
    TEM Journal , Vol. 6, No. 3, 479-483,
  • Yuriy Mishchenko.
    (2016) Application of the radial distribution function for quantitative analysis of neuropil microstructure in stratum radiatum of CA1 region in hippocampus.
    Medical Research Archives , Vol. 4,

Hakemli dergilerde yayımlanmış veya kabul edilmiş makaleler

Ulusal

  • Zalike Keskin , Aylin Sendemir-Urkmez.
    (2016) Bioengineering as Art.
    Dokuz Eylul University Faculty Of Engineering Journal Of Engineering Science , Vol. 52, No. 18, 128-138,
  • Yuriy Mishchenko.
    (2017) Developing a 3- to 6-state slow cortical potentials Brain-Computer Interface for high performance control of a 3D robotic manipulator.
    BIT / BITs 8th Annual World Congress Of NeuroTalk 2017
  • Erkan Ozbay , Yuriy Mishchenko , Murat Kaya , Hilmi Yanar.
    (2016) Control of a virtual robotic hand manipulator using a non-invasive EEG-based brain-machine interface.
    Proceedings Of 1st International Mediterranean Science And Engineering Congress (IMSEC 2016)
    1006-1007,
  • Y Mishchenko , M Kaya , H Yanar , E Ozbay.
    (2016) Characterization of the key properties of electroencephalographic signal for noninvasive brain machine/computer interface applications.
    Society For Neuroscience Annual Meeting 2016
  • H Yanar , Y Mishchenko.
    (2016) A hidden Markov Model of electroencephalographic brain activity for advanced EEG-based brain computer interfaces.
    24th IEEE Signal Processing And Communications Applications Conference SIU2016
  • M Kaya , H Yanar , Y Mishchenko.
    (2016) Developing computational infrastructure for an EEG- based brain computer interface.
    24th IEEE Signal Processing And Communications Applications Conference SIU2016
  • Bike Kilic.
    (2015) Automated Dendritic Spine Tracking on 2-Photon Microscopic Images.
    Proc. Of IEEE 23rd Signal Processing And Communications Applications Conference (SIU), Malatya - Turkey
  • Gokhan Gokay.
    (2015) Manual and Automatic Size Measurements of Lateral Ventricles and Central Sulci and Their Compliance with Atrophy Grade.
    Proc. Of IEEE National Congress On Medical Technologies (TipTekno), Mugla - Turkey
  • Y Mishchenko , M Kaya.
    (2015) Detecting the attention state of an operator in continuous attention task using EEG-based Brain-Computer Interface.
    23rd IEEE Signal Processing And Commu- Nications Applications Congress SIU2015
  • Ertunc Erdil.
    (2015) A Joint Classification and Segmentation Approach for Dendritic Spine Segmentation in 2-Photon Microscopy Images.
    Proc. Of International Symposium On Biomedical Imaging: From Nano To Macro (ISBI), New York - USA
  • Muhammad Usman Ghani.
    (2015) Dendritic Spine Shape Classification from Two-Photon Microscopy Images.
    Proc. Of IEEE 23rd Signal Processing And Communications Applications Conference (SIU), Malatya - Turkey
  • Leonardo O. Iheme.
    (2015) A Call for Automation, Standardization and Consistency in White Matter Hyperintensity Visual Grading.
    Proc. Of IEEE National Congress On Medical Technologies (TipTekno), Mugla - Turkey
  • Lavdie Rada.
    (2014) Automatic Dendritic Spine Detection Using Multiscale Dot Enhancement Filter and SIFT Features.
    IEEE International Conference On Image Processing (ICIP)
  • Gokhan Gokay.
    (2014) Comparison of Cerebral Atrophy Grade with Sizes of Lateral Ventricle and Central Sulci.
    Proc. Of IEEE 22nd Signal Processing And Communications Applications Conference (SIU), Trabzon - Turkey
  • M Kaya , Y Mishchenko , H Seckin.
    (2014) Methods for direct brain-computer communications using a Brain-Computer Interface.
    4th Regional Project Fair Of East Mediterranean Universities
  • Y Mishchenko.
    (2014) ”Reconstructing functional connectivity in complete neural populations by randomized sparse sampling.
    COSYNE 2014 Conference
  • Volkan Ozdemir.
    (2014) Content and Context based Similarity for Disease Diagnosis.
    Proc. Of IEEE 22nd Signal Processing And Communications Applications Conference (SIU), Trabzon - Turkey
  • Ertunc Erdil.
    (2014) SpineS: An Automatic Tool for Finding Volume Changes of Dendritic Spines in Time in 2-Photon Microscopy Images.
    12th National Neuroscience Congress, İstanbul
  • E Onel , Y Mishchenko , M Miman.
    (2014) The relationships between use features of Information Management Systems.
    Congress On Information Management Systems YBS2014
  • O Akirmak , M Miman , Y Mishchenko.
    (2014) A system for lane-tracking suitable for day and night conditions.
    4th Regional Project Fair Of East Mediterranean Universities
  • Y Mishchenko.
    (2012) Fluorescent co-localization synaptic markers for connectome reconstructions.
    8th FENS Forum Of Neuroscience
  • Y Mishchenko , L Paninski.
    (2011) Efficient methods for sampling spike trains in networks of coupled neurons.
    COSYNE 2011 Conference
  • J Vogelstein , T Machado , Y Mishchenko , A Packer , R Yuste , L Paninski.
    (2010) Methods for in vitro neural circuit inference from population calcium imaging data.
    COSYNE 2010 Conference
  • Y Mishchenko , J Vogelstein , L Pan.
    (2009) Statistical reconstruction of neural connectiv- ity from the data produced.
    Society For Neuroscience Annual Meeting 2009
  • J Vogelstein , Y Mishchenko , A Packer , T Machado , R Yuste , L Paninski.
    (2009) Towards confirming neural circuit inference from population calcium imaging.
    NIPS 2009 Workshop On Connectivity Inference In Neuroimaging
  • J Vogelstein , Y Mishchenko , A Packer , T Machado , R Yuste , L Paninski.
    (2009) Towards confirming neural circuit inference from population calcium imaging..
    Society For Neuroscience Annual Meeting 2009
  • Burcak Alp , Umber Cheema , Vivek Mudera , Robert Brown.
    (2008) Rapid tissue fabrication by plastic compression.
    Biomed 2008
  • Burcak Alp , Zimei Rong , Umber Cheema , Robert Brown.
    (2007) Measurement of glucose and oxygen concentration in biomimetic constructs.
    TERMIS, European Chapter Meeting
  • Burcak Alp , Gordon Blunn , Robert Brown.
    (2007) Automated Rapid Tissue Fabrication Device:Prototype and Proof of Principle, Plastic.
    Reconstructive And Aesthetic Surgery Stem Cell And Tissue Engineering Symposium
  • Umber Cheema , Burcak Alp , AJ Macrobert , Robert Brown.
    (2007) Monitoring Oxygen Depletion at the Core of Engineered Implants.
    The Stem Cell And Tissue Engineering In Plastic, Reconstructive And Aesthetic Surgery
  • Burcak Alp , Gerard Markx.
    (2006) Patterning of mammalian cells by dielectrophoresis for the study of their interaction through NOTCH signalling.
    Biodielectrics: Theories, Mechanisms, Applications
  • Burcak Alp , Zimei Rong , Vivek Mudera , Pankaj Vadgama , Robert Brown.
    (2006) Glucose monitoring in plastic compressed and double compressed collagen constructs: Implication for tissue engineering.
    TERMIS, European Chapter Meeting
  • Burcak Alp , Paul Kemp , Richard Wolowacz , Gerard Markx.
    (2004) On-line monitoring of cell biomass in skin tissue constructs using dielectric spectroscopy.
    The Eight World Congress On Biosensors
  • Burcak Alp , Gerard Markx.
    (2002) Patterning of cells in AC electric fields.
    Electromagnetic Methods In Pharmacy And Medicine
  • Yuriy Mishchenko - -.
    (2009) Nontrivial vacuum solutions in flavor mixing and critical phenomena.
    VDM Verlag: Saarbrucken ,
    Yazar
  • Y Mishchenko , C Ji.
    General formulation of flavor mixing in Quantum Field Theory.
    115-149
    O Kovras.
    Focus on Quantum Field Theory.
    (2005), Nova Science Publisher,
  • C Ji , Y Mishchenko , A Shalaby.
    Duality and canonical transformations in the scalar field theory.
    1487-1510
    S Pandalai.
    Recent Developments in Physics.
    (2004), Transworld Research Network, Vol. 5,
  • Y Mishchenko , C Ji.
    Distribution of mass in galaxy cluster CL0024 and the particle mass of dark matter.
    217-239
    J Val Blain.
    Progress in Dark Matter Research.
    (2004), Nova Science Publisher,